The Spectrum of HPE: Subtypes and Features
Published: | Updated:
At a Glance
Holoprosencephaly (HPE) is a spectrum of brain malformations classified by how much the fetal brain failed to separate into two halves. Subtypes range from alobar (no separation) to lobar (nearly complete separation). Generally, the severity of facial differences reflects the degree of brain fusion.
Key Takeaways
- • HPE is classified into specific subtypes (alobar, semilobar, lobar, and MIHV) based on the degree of brain separation.
- • Alobar HPE is the most severe form, characterized by a complete failure of the brain to divide into two hemispheres.
- • Microform HPE is the mildest type, where the brain appears mostly typical but subtle facial signs are present.
- • Generally, the severity of facial differences, such as hypotelorism or a proboscis, predicts the severity of the brain fusion.
- • Families with a ZIC2 gene mutation may have a child with a severe brain subtype but very few facial differences.
Because Holoprosencephaly (HPE) is a spectrum, a child’s diagnosis is often classified into a specific “subtype.” These subtypes are defined by how much of the brain failed to divide and which specific structures are fused or missing [1][2].
The Spectrum of Brain Subtypes
Neuroimaging, such as prenatal ultrasound and Fetal MRI, allows doctors to look for specific landmarks in the brain to determine the subtype [3][4].
Comparing HPE Subtypes
| Subtype | Brain Separation | Key Imaging Findings |
|---|---|---|
| Alobar | No separation | The most severe form. The brain has a single large cavity (monoventricle) and the thalami (the brain’s relay centers) are fused together. The falx cerebri (the membrane that separates the two sides) is missing [1][5]. |
| Semilobar | Partial separation | The back of the brain is somewhat divided, but the front remains fused. The thalami may be partially fused, and the septum pellucidum (a thin membrane in the middle of the brain) is absent [6][7]. |
| Lobar | Nearly complete separation | The brain is mostly divided into two halves, but some fusion remains in the very front (frontal lobes). The septum pellucidum is still typically missing [8][3]. |
| MIHV (Middle Interhemispheric Variant) | Middle separation failure | Also called Syntelencephaly, this subtype involves fusion in the middle of the brain (the posterior frontal and parietal lobes), while the very front and back of the brain are correctly separated [9][10]. |
| Microform | Minimal to no brain fusion | The brain itself may appear typical, but the individual has subtle physical signs of HPE, such as a single central incisor (one front tooth instead of two) or eyes that are very close together (hypotelorism) [11][12]. |
Craniofacial Differences: “The Face Predicts the Brain”
In most cases of HPE, the way the face develops is closely linked to how the brain develops [3]. This is often described by doctors as “the face predicts the brain,” meaning more significant facial differences often correspond to more severe brain fusion [13][14].
Common craniofacial anomalies associated with HPE include:
- Cyclopia: A single eye or two eyes very close together in a single socket [13].
- Proboscis: A tube-like structure, often located above the eyes, that takes the place of a typical nose [13].
- Cebocephaly: A nose with a single nostril and eyes that are very close together [15].
- Premaxillary Agenesis: The absence of the middle part of the upper jaw and lip, which can cause a very flat facial profile [16].
- Hypotelorism: Decreased distance between the eyes [17].
The Important Exception: ZIC2 Mutations
While “the face predicts the brain” is a common rule of thumb, there are significant exceptions. Families who have a mutation in the ZIC2 gene may have a child with a severe brain subtype (like alobar or semilobar) but very few, or even no, facial differences [18][7]. This is why advanced imaging like an MRI is always necessary to understand the full picture [19].
Frequently Asked Questions
What are the different subtypes of holoprosencephaly (HPE)?
What does an alobar HPE diagnosis mean?
Does the face always predict how severe the brain malformation is in HPE?
What is microform HPE?
How do doctors figure out which HPE subtype my baby has?
Questions for Your Doctor
- • Based on the imaging, does my child have alobar, semilobar, lobar, or MIHV (syntelencephaly)?
- • Are the thalami fused or separate in our child's brain?
- • Are certain structures, like the corpus callosum or the septum pellucidum, present or missing?
- • Does our child have any facial features that suggest a microform of HPE?
- • If our child has a more severe brain malformation but very few facial differences, could this be related to a ZIC2 gene mutation?
Questions for You
- • How does understanding the specific subtype help me feel more prepared for the future?
- • Have I noticed any subtle physical traits in myself or my partner, such as a single front tooth or eyes that seem close together?
- • What information from the doctor's explanation of the imaging was most confusing to me?
Want personalized information?
Type your question below to get evidence-based answers tailored to your situation.
References
- 1
Alobar holoprosencephaly with cebocephaly in a neonate: A rare case report from Northern Tanzania.
Ariyo IJ, Mchaile DN, Magwizi M, et al.
International journal of surgery case reports 2022; (93()):106960 doi:10.1016/j.ijscr.2022.106960.
PMID: 35364389 - 2
Semilobar Holoprosencephaly: Capacious Anomaly in the Cephalad.
Veluchamy M, Murugan M
Cureus 2020; (12(7)):e9181 doi:10.7759/cureus.9181.
PMID: 32802616 - 3
The wide spectrum of ultrasound diagnosis of holoprosencephaly.
Ionescu CA, Vladareanu S, Tudorache S, et al.
Medical ultrasonography 2019; (21(2)):163-169 doi:10.11152/mu-1614.
PMID: 31063520 - 4
In Utero MR Imaging of Fetal Holoprosencephaly: A Structured Approach to Diagnosis and Classification.
Griffiths PD, Jarvis D
AJNR. American journal of neuroradiology 2016; (37(3)):536-43 doi:10.3174/ajnr.A4572.
PMID: 26564444 - 5
Phenotypic Spectrum and Chromosomal Discordance in Alobar Holoprosencephaly: A Comparative Case Series from a Tertiary Referral Center.
Caropeboka MFA, Nisa AS, Pramatirta AY, et al.
International medical case reports journal 2026; (19()):569641 doi:10.2147/IMCRJ.S569641.
PMID: 41710465 - 6
Sonography of fetal holoprosencephaly: a guide to recognize the lesser varieties.
Montaguti E, Cariello L, Brunelli E, et al.
The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2022; (35(25)):9717-9723 doi:10.1080/14767058.2022.2050900.
PMID: 35272544 - 7
Semilobar Holoprosencephaly Caused by a Novel and De Novo ZIC2 Pathogenic Variant.
Nonkulovski D, Sofijanova A, Spasovska T, et al.
Balkan journal of medical genetics : BJMG 2023; (25(2)):71-76 doi:10.2478/bjmg-2022-0017.
PMID: 37265970 - 8
Lobar holoprosencephaly with associated meningocele: A rare case report of a 25-year-old patient with multiple seizures.
Barman P, Mishra GV, Murugan G, et al.
Radiology case reports 2025; (20(4)):2004-2008 doi:10.1016/j.radcr.2025.01.029.
PMID: 39963386 - 9
Middle interhemispheric variant of holoprosencephaly in an asymptomatic adult.
Özdemir M, Turan A, Kavak RP
BJR case reports 2019; (5(4)):20190035 doi:10.1259/bjrcr.20190035.
PMID: 31938566 - 10
The middle interhemispheric variant of holoprosencephaly: magnetic resonance and diffusion tensor imaging findings.
Bulakbasi N, Cancuri O, Kocaoğlu M
The British journal of radiology 2016; (89(1063)):20160115 doi:10.1259/bjr.20160115.
PMID: 27089898 - 11
Pituitary stalk interruption syndrome.
Voutetakis A
Handbook of clinical neurology 2021; (181()):9-27 doi:10.1016/B978-0-12-820683-6.00002-6.
PMID: 34238482 - 12
Microform holoprosencephaly with bilateral congenital elbow dislocation; increasing the phenotypic spectrum of Steinfeld syndrome.
Jones GE, Robertson L, Maniyar A, et al.
American journal of medical genetics. Part A 2016; (170(3)):754-9 doi:10.1002/ajmg.a.37511.
PMID: 26728615 - 13
Neuropathology of holoprosencephaly.
Fallet-Bianco C
American journal of medical genetics. Part C, Seminars in medical genetics 2018; (178(2)):214-228 doi:10.1002/ajmg.c.31623.
PMID: 30182440 - 14
Holoprosencephaly: Review of Embryology, Clinical Phenotypes, Etiology and Management.
Malta M, AlMutiri R, Martin CS, Srour M
Children (Basel, Switzerland) 2023; (10(4)) doi:10.3390/children10040647.
PMID: 37189898 - 15
Cyclopia: isolated and with agnathia-otocephaly complex.
Wai LT, Chandran S
BMJ case reports 2017; (2017()) doi:10.1136/bcr-2017-220159.
PMID: 28855214 - 16
Fetal Cyclopia, Proboscis, Holoprosencephaly, and Polydactyly: A Case Report With Review of Literature.
Kollu R, Kotamraju S, Uligada S, Varunya M
Cureus 2023; (15(2)):e34576 doi:10.7759/cureus.34576.
PMID: 36883090 - 17
Cyclopia in a newborn rhesus macaque born to a dam infected with SIV and receiving antiretroviral therapy during pregnancy.
Doyle-Meyers L, Dong C, Xu EQ, et al.
Current trends in immunology 2023; (24()):91-103.
PMID: 39640529 - 18
ZIC2 in Holoprosencephaly.
Barratt KS, Arkell RM
Advances in experimental medicine and biology 2018; (1046()):269-299 doi:10.1007/978-981-10-7311-3_14.
PMID: 29442327 - 19
Holoprosencephaly spectrum: an up-to-date overview of classification, genetics and neuroimaging.
Gomez GD, Corrêa DG, Trapp B, et al.
Japanese journal of radiology 2025; (43(1)):13-31 doi:10.1007/s11604-024-01655-8.
PMID: 39259418
This page provides educational information about holoprosencephaly (HPE) subtypes and associated facial features. Always consult your pediatric neurologist or maternal-fetal medicine specialist for specific medical advice regarding your baby's prenatal imaging and diagnosis.
Stay up to date
Get notified when new research about Holoprosencephaly is published.
No spam. Unsubscribe anytime.