Diagnosis, Testing, and Recognizing Look-Alikes
At a Glance
La Crosse encephalitis is diagnosed using a combination of antibody tests on blood or spinal fluid, MRI brain imaging, and EEG monitoring. Because it closely mimics Herpes Simplex Virus on an MRI, doctors often prescribe antivirals until highly specific tests confirm the La Crosse virus.
Diagnosing La Crosse encephalitis (LACV) is a complex process that often requires a combination of laboratory tests, advanced brain imaging, and monitoring of electrical brain activity. Because LACV can look very similar to other infections, doctors must act as detectives to rule out “look-alike” conditions while confirming the presence of the virus [1][2].
Laboratory Testing and the “Cross-Reactivity” Challenge
The primary way doctors confirm LACV is by looking for antibodies—proteins the immune system creates to fight the virus. These tests are typically performed on both blood (serum) and cerebrospinal fluid (CSF) obtained via a lumbar puncture [2][3].
- IgM and IgG: Doctors look for IgM (short-term antibodies that appear during an active infection) and IgG (long-term antibodies that show up later) [4].
- The Problem of Cross-Reactivity: LACV belongs to a family called California serogroup viruses. Other viruses in this family, like the Jamestown Canyon virus, can trigger a “false positive” on standard antibody tests because the antibodies look so similar [5][4].
- The “Gold Standard” Test: To be certain, labs may perform a Plaque Reduction Neutralization Test (PRNT). This highly specific test determines exactly which virus is present by seeing which one the patient’s antibodies “neutralize” or disable most effectively [5].
Brain Imaging: The LACV Signature
A Magnetic Resonance Imaging (MRI) scan is a critical tool for seeing how the virus is affecting the brain. LACV often leaves a specific “signature” or pattern of inflammation:
- Deep Brain Involvement: Inflammation is frequently seen in the thalamus and basal ganglia, which are deep structures in the brain that help control movement and sensory information [1].
- Leptomeningeal Enhancement: This refers to inflammation in the thin layers (meninges) that cover the brain [1].
- Punctate Foci: Doctors may see small, “dot-like” spots of inflammation throughout the brain tissue [1].
The Herpes Simplex Virus (HSV) “Mimic”
One of the most important parts of diagnosis is distinguishing LACV from Herpes Simplex Virus (HSV) Encephalitis. This is critical because HSV requires immediate treatment with specific antiviral medication (acyclovir), while LACV does not [1].
- Temporal Lobe Involvement: Both viruses frequently cause inflammation in the temporal lobe (the area of the brain behind the ears). Because they look so similar on an MRI, doctors often start children on acyclovir “just in case” until the LACV test results come back and confirm the true cause [1].
The Role of EEG in Predicting the Future
An Electroencephalogram (EEG) measures the electrical activity of the brain. While it helps diagnose the current infection, its most important role for parents is predicting long-term health.
- Predicting Epilepsy: An EEG performed during the hospital stay can help identify children who have a higher risk of developing epilepsy (chronic seizures) later in life [6]. If the EEG shows certain “sharp waves” or “spikes,” your medical team may recommend more frequent follow-up care with a neurologist [6]. Read more about this risk in Life After the Hospital.
Emerging Technology
While standard antibody tests are the current rule, newer methods like Metagenomic Next-Generation Sequencing (mNGS) are becoming more available. This technology can scan for thousands of different pathogens at once, which can be helpful in difficult cases where standard tests are unclear [7][8].
Common questions in this guide
How is La Crosse encephalitis diagnosed?
Why was my child started on acyclovir before the test results came back?
What does an MRI show when a child has La Crosse encephalitis?
Why did the doctor order an EEG for my child?
Questions to Ask Your Doctor
Curated prompts to bring to your next appointment.
- 1.Did my child's MRI show inflammation in the temporal lobe, and how was Herpes Simplex Virus (HSV) ruled out?
- 2.Were 'neutralization tests' (PRNT) performed to ensure this was specifically La Crosse virus and not another California serogroup virus?
- 3.What did the EEG reveal about my child's current brain activity, and were there 'epileptiform discharges' that might indicate a higher risk for future seizures?
- 4.Was the diagnosis confirmed through blood (serum) or spinal fluid (CSF), and should we expect to repeat these tests later to look for 'seroconversion'?
- 5.Does the presence of 'leptomeningeal enhancement' on the MRI change the expected recovery timeline?
Questions For You
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References
References (8)
- 1
MRI Findings of La Crosse Virus Encephalitis in the Pediatric Population.
Shariati F, Ganapathy S, Brown M, Upadhyayula S
Journal of the Pediatric Infectious Diseases Society 2025; (14(6)) doi:10.1093/jpids/piaf025.
PMID: 40084509 - 2
West Nile Virus and Other Nationally Notifiable Arboviral Diseases - United States, 2023.
Padda H, Jacobs D, Gould CV, et al.
MMWR. Morbidity and mortality weekly report 2025; (74(21)):358-364 doi:10.15585/mmwr.mm7421a1.
PMID: 40504766 - 3
Detection of La Crosse virus RNA in clinical specimens obtained from children with La Crosse infection.
Wang H, Everhart K, Oyeniran SJ, Leber AL
Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2026; (183()):105923 doi:10.1016/j.jcv.2026.105923.
PMID: 41619618 - 4
Acute Seroconversion of Eastern Equine Encephalitis Coinfection With California Serogroup Encephalitis Virus.
Cho JJ, Wong JK, Henkel J, et al.
Frontiers in neurology 2019; (10()):242 doi:10.3389/fneur.2019.00242.
PMID: 30941092 - 5
Serological Survey for Antibodies to Mosquito-Borne Bunyaviruses Among US National Park Service and US Forest Service Employees.
Kosoy O, Rabe I, Geissler A, et al.
Vector borne and zoonotic diseases (Larchmont, N.Y.) 2016; (16(3)):191-8 doi:10.1089/vbz.2015.1865.
PMID: 26855300 - 6
La Crosse Virus Neuroinvasive Disease in Children: A Contemporary Analysis of Clinical/Neurobehavioral Outcomes and Predictors of Disease Severity.
Boutzoukas AE, Freedman DA, Koterba C, et al.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2023; (76(3)):e1114-e1122 doi:10.1093/cid/ciac403.
PMID: 35607778 - 7
Metagenomics for neurological infections - expanding our imagination.
Ramachandran PS, Wilson MR
Nature reviews. Neurology 2020; (16(10)):547-556 doi:10.1038/s41582-020-0374-y.
PMID: 32661342 - 8
The Next Generation of Ocular Pathogen Detection.
Sabapathypillai SL, James HR, Lyerla RRL, Hassman L
Asia-Pacific journal of ophthalmology (Philadelphia, Pa.) 2021; (10(1)):109-113 doi:10.1097/APO.0000000000000366.
PMID: 33512832
This page explains diagnostic testing for La Crosse encephalitis for educational purposes. Always consult a pediatric neurologist or infectious disease specialist to interpret your child's specific MRI, EEG, or laboratory results.
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