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Pediatric Hematology · JAGN1-related severe congenital neutropenia

Considering a Bone Marrow Transplant for JAGN1

At a Glance

For children with JAGN1-related severe congenital neutropenia, a bone marrow transplant may be considered when G-CSF does not control infections or neutrophil counts, high doses are needed, or abnormal marrow changes or leukemia develop. It may correct blood symptoms but carries serious risks.

For many children with JAGN1 severe congenital neutropenia (SCN), daily injections of G-CSF are enough to manage the condition. However, for some, the “factory” in the bone marrow simply does not respond well enough to medicine. In these cases, a hematopoietic stem cell transplant (HSCT)—also known as a bone marrow transplant—may be considered. It is currently the only known potential correction for the blood-related symptoms of JAGN1 deficiency [1][2].

When Is a Transplant Recommended?

A transplant is a major medical procedure with significant risks, so the decision is highly individualized. It is usually reserved for specific situations where the benefits of a “new” immune system outweigh the dangers of the procedure itself [3]. Doctors typically consider HSCT for JAGN1 patients in the following scenarios:

  • G-CSF Refractoriness or Inadequate Response: This means the bone marrow does not produce enough neutrophils, or the patient continues to suffer from repeated bouts of severe infections despite optimized G-CSF, indicating the therapy is not providing a “functional” response [4][2][5].
  • The “High-Dose” Threshold: While there is no single universal rule, in some major clinical registries (like the French ELANE registry), requiring more than 15 micrograms per kilogram (µg/kg) per day has been used as a threshold to evaluate patients for transplant eligibility, due to the risks of prolonged high-dose dependence [6][4].
  • MDS or AML: If regular bone marrow monitoring shows signs of myelodysplastic syndrome (MDS) or acute myeloid leukemia (AML)—conditions where the bone marrow cells begin to grow abnormally or become cancerous—a specialized oncology team will guide the management plan, which often involves a transplant [4][7].

Balancing the Transplant Risks

While a successful transplant can correct the neutropenia, it carries severe, life-threatening risks. These risks include severe infection during the recovery period, regimen-related organ toxicity, infertility, chronic Graft-versus-Host Disease (GvHD) (where donor cells attack the patient’s body), graft failure, secondary malignancy, and prolonged hospitalization or death [1][3]. Furthermore, HSCT typically corrects only the blood defect; it does not reverse established dental problems or syndromic features like short stature [4][8].

JAGN1-SCN also has a very specific challenge called autologous reconstitution [4].

Autologous reconstitution happens when the patient’s own JAGN1-deficient stem cells—the ones that survived the pre-transplant chemotherapy—begin to grow back and push out the healthy donor cells [4]. If this happens, the neutropenia and the risk of infection return. In the largest study of JAGN1 patients to date, a small number of children experienced this and required a second transplant to successfully replace the “broken” immune system [4].

The Transplant Process

The goal of HSCT is to replace your child’s JAGN1-deficient stem cells with healthy ones from a donor. This involves several stages:

  1. Conditioning: Your child receives chemotherapy (and sometimes radiation) to clear out their own bone marrow and make room for the new cells [1].
  2. Infusion: The donor’s stem cells are given through an IV, similar to a blood transfusion.
  3. Engraftment: The family waits several weeks for the new cells to travel to the bone marrow and begin producing healthy white blood cells, red blood cells, and platelets. This requires center-specific hospitalization and infection precautions [3].

Making the Decision

Deciding to pursue a transplant is a deeply personal and complex choice. It is essential to have these conversations at a specialized pediatric transplant center that has experience with rare genetic immune deficiencies. They can help you weigh your child’s specific infection history, the risks of the conditioning regimen, and donor options against the potential for a permanent hematologic correction [2].

Common questions in this guide

When might a child with JAGN1-SCN need a bone marrow transplant?
HSCT may be considered when optimized G-CSF does not produce enough neutrophils or the child continues to have severe infections. Doctors may also evaluate transplant when prolonged high-dose G-CSF is needed or when myelodysplastic syndrome (MDS) or acute myeloid leukemia (AML) develops, but the decision is individualized.
How does the G-CSF dose affect the decision to pursue HSCT?
A poor response means the bone marrow does not make enough neutrophils or severe infections continue despite optimized G-CSF. Some clinical registries have used more than 15 micrograms per kilogram per day as a threshold for transplant evaluation, but there is no universal cutoff for every child.
What are the risks of HSCT for JAGN1-related neutropenia?
Risks include severe infection during recovery, organ toxicity from conditioning treatment, infertility, chronic graft-versus-host disease, graft failure, secondary cancer, prolonged hospitalization, and death. The transplant team weighs these risks against the danger of ongoing neutropenia and severe infections.
What happens during a bone marrow transplant for JAGN1-SCN?
First, conditioning chemotherapy and sometimes radiation clear space in the bone marrow. Donor stem cells are then infused through an IV, followed by several weeks of monitoring and infection precautions while the cells engraft and begin making blood cells.
What is autologous reconstitution after a JAGN1 transplant?
Autologous reconstitution occurs when a child's own JAGN1-deficient stem cells survive conditioning, grow back, and displace donor cells. Neutropenia and infection risk can return, and some children may need a second transplant.
Will HSCT improve my child's growth or dental problems?
HSCT typically corrects the blood-related neutropenia but does not reverse established dental problems, short stature, or other syndromic features. Ask the transplant team which parts of your child's condition are expected to improve.

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References

References (8)
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    Case report: Granulocyte-macrophage colony-stimulating factor sargramostim did not rescue the neutrophil phenotype in two patients with JAGN1-mutant severe congenital neutropenia.

    Farmand S, Aydin SE, Wustrau K, et al.

    Frontiers in immunology 2024; (15()):1373495 doi:10.3389/fimmu.2024.1373495.

    PMID: 39286252
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    Congenital neutropenia: disease models guiding new treatment strategies.

    Touw IP

    Current opinion in hematology 2022; (29(1)):27-33 doi:10.1097/MOH.0000000000000696.

    PMID: 34854832
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    Extended clinical phenotypes and treatment modalities in 32 JAGN1-deficient patients: a multicenter study by ESID and EBMT IEWP.

    Fekadu-Siebald J, Salzmann-Manrique E, Heusel JR, et al.

    Blood advances 2025; (9(7)):1702-1711 doi:10.1182/bloodadvances.2024014344.

    PMID: 39775668
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    GM-CSF treatment is not effective in congenital neutropenia patients due to its inability to activate NAMPT signaling.

    Koch C, Samareh B, Morishima T, et al.

    Annals of hematology 2017; (96(3)):345-353 doi:10.1007/s00277-016-2894-5.

    PMID: 27966038
  6. 6

    HSCT may lower leukemia risk in ELANE neutropenia: a before-after study from the French Severe Congenital Neutropenia Registry.

    Rotulo GA, Beaupain B, Rialland F, et al.

    Bone marrow transplantation 2020; (55(8)):1614-1622 doi:10.1038/s41409-020-0800-1.

    PMID: 31992846
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    Severe congenital neutropenias.

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    Nature reviews. Disease primers 2017; (3()):17032 doi:10.1038/nrdp.2017.32.

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    Phenotypic Variability Associated with Jagunal Homolog 1 (JAGN1) Deficiency Caused by the c.63G>T Variant.

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    International journal of molecular sciences 2026; (27(4)) doi:10.3390/ijms27041735.

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This page is for informational purposes only and does not constitute medical advice. Your child's pediatric hematology and transplant team should guide decisions about HSCT for JAGN1-related neutropenia.