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Clinical Genetics

The Biology and Diagnosis of JBS

At a Glance

Johanson-Blizzard syndrome is caused by mutations in both copies of the UBR1 gene. It is usually suspected from pancreatic insufficiency and underdeveloped nostrils, then evaluated with UBR1 sequencing and deletion or duplication testing.

Understanding the biology of Johanson-Blizzard Syndrome (JBS) helps clarify why it affects so many different parts of the body at once. At its core, JBS is a disorder involving a specific cellular process called the N-end rule pathway, which acts as a “quality control” system for proteins [1][2].

The Role of the UBR1 Gene

Every person has two copies of the UBR1 gene, which provides instructions for making an E3 ubiquitin ligase—a protein that acts like a specialized inspector in your cells [1].

In a healthy cell, the UBR1 protein identifies other proteins that have specific destabilizing signals and “tags” them for destruction, ensuring the cell remains functional [1][2]. In JBS, mutations in the UBR1 gene mean this inspector is either missing or unable to recognize the proteins it needs to tag [2]. This is a simplified model, but the disruption of this pathway is particularly damaging to the early development of the pancreas and certain facial features before a baby is even born [3][4]. It is important to note that the specific gene mutation does not reliably predict how severe the syndrome will be in an individual child.

How JBS is Inherited

JBS follows an autosomal recessive inheritance pattern. This means that for a child to have the syndrome, they must inherit one changed (mutated) copy of the UBR1 gene from each parent [5].

  • Carriers: Parents are typically “carriers.” They have one working gene and one changed gene. Because the working gene does its job perfectly, carriers do not have any symptoms of JBS [5].
  • The 25% Rule: When two carriers have a child, there is a 25% chance with each pregnancy that the child will inherit both changed genes and have JBS. There is a 50% chance the child will be a carrier like their parents, and a 25% chance the child will inherit two working genes [5].

The Diagnostic Process

Doctors typically suspect JBS based on clinical observation. The “hallmark” signs that usually trigger testing are exocrine pancreatic insufficiency (difficulty digesting food) and hypoplastic nasal alae (underdeveloped or small nostrils) [6][7].

Diagnosis relies on genetic confirmation, though an inconclusive test does not entirely rule out the syndrome. Testing is typically selected by a genetics professional:

  1. Gene Sequencing: This is the first step, where the lab “reads” the UBR1 gene to look for spelling errors. This identifies many mutations [1].
  2. Deletion/Duplication Analysis (such as MLPA): If sequencing is negative or only finds one mutation but the child has clear symptoms, a test to look for missing or extra “pages” of the genetic code is often used. This step increases the ability to find the responsible mutations [1]. If both tests are unrevealing, doctors may use larger panels or exome sequencing.

Distinguishing JBS from Similar Conditions

Because JBS involves the pancreas, it can sometimes be confused with other disorders. A geneticist will help rule out mimics:

  • Cystic Fibrosis (CF): The most common cause of pancreatic insufficiency in children, but caused by a different gene and lacking the specific facial features of JBS.
  • Shwachman-Diamond Syndrome (SDS): Like JBS, children with SDS have pancreatic issues. However, SDS is frequently associated with bone marrow failure (low blood counts) and specific bone abnormalities [8]. Molecular testing and blood counts are used to distinguish the two.
  • CAPN15-Related Disease: A very rare condition that can overlap with JBS in growth and developmental delays, but typically lacks the specific nasal features seen in JBS [9].

By confirming the diagnosis through UBR1 testing, your care team can focus entirely on the management strategies known to help children with Johanson-Blizzard Syndrome [10][3].

Common questions in this guide

What causes Johanson-Blizzard syndrome?
Johanson-Blizzard syndrome is caused by mutations in both copies of the UBR1 gene. UBR1 helps cells remove certain proteins, and disruption of this process can affect development of the pancreas and facial structures.
How is Johanson-Blizzard syndrome diagnosed?
Doctors often suspect Johanson-Blizzard syndrome when a child has exocrine pancreatic insufficiency and hypoplastic nasal alae, or underdeveloped nostrils. Genetic testing, beginning with UBR1 sequencing and sometimes followed by deletion or duplication analysis such as MLPA, is used to confirm the diagnosis.
What is the chance of having another child with JBS if both parents are carriers?
When both parents carry one changed copy of UBR1, each pregnancy has a 25% chance of resulting in a child with Johanson-Blizzard syndrome. There is also a 50% chance the child will be a carrier and a 25% chance the child will inherit two working copies.
How can doctors distinguish JBS from cystic fibrosis or Shwachman-Diamond syndrome?
Johanson-Blizzard syndrome can resemble cystic fibrosis or Shwachman-Diamond syndrome because each may involve pancreatic problems. UBR1 testing, facial features, blood counts, bone findings, and condition-specific genetic testing help clinicians distinguish these disorders.
Does the specific UBR1 mutation predict how severe JBS will be?
Not reliably. The specific UBR1 mutation does not consistently predict how severe Johanson-Blizzard syndrome will be, so the healthcare team assesses the child's individual findings and ongoing health needs.
What happens if the first UBR1 test is negative?
A negative UBR1 sequencing result does not completely rule out Johanson-Blizzard syndrome when the clinical findings are suggestive. Deletion or duplication analysis, such as MLPA, and sometimes a larger gene panel or exome sequencing can look for changes that the first test may miss.

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Questions to Ask Your Doctor

Curated prompts to bring to your next appointment.

  1. 1.Has my child had both UBR1 gene sequencing and a deletion/duplication (MLPA) test to fully check for mutations?
  2. 2.How do we know for sure this is JBS and not Cystic Fibrosis or Shwachman-Diamond syndrome—have those specific tests been run as well?
  3. 3.Can you explain the specific UBR1 mutations found and whether they were inherited from both parents or occurred 'de novo'?
  4. 4.Does the specific type of mutation my child has tell us anything about what to expect for their health long-term?
  5. 5.Can we arrange to meet with a genetic counselor to discuss recurrence risks for future pregnancies?

References

References (10)
  1. 1

    Expanding the mutational spectrum in Johanson-Blizzard syndrome: identification of whole exon deletions and duplications in the UBR1 gene by multiplex ligation-dependent probe amplification analysis.

    Sukalo M, Schäflein E, Schanze I, et al.

    Molecular genetics & genomic medicine 2017; (5(6)):774-780 doi:10.1002/mgg3.319.

    PMID: 29178640
  2. 2

    Bound Waters Mediate Binding of Diverse Substrates to a Ubiquitin Ligase.

    Muñoz-Escobar J, Matta-Camacho E, Cho C, et al.

    Structure (London, England : 1993) 2017; (25(5)):719-729.e3 doi:10.1016/j.str.2017.03.004.

    PMID: 28392261
  3. 3

    Clinical Characteristics and Genetic Causes of Infantile Exocrine Pancreatic Insufficiency in Chinese Patients: Study From a Tertiary Care Center.

    Ye Z, Zhou Y, Huang Y, et al.

    Pancreas 2018; (47(10)):1344-1349 doi:10.1097/MPA.0000000000001185.

    PMID: 30308536
  4. 4

    Loss of protein quality control gene UBR1 sensitizes Saccharomyces cerevisiae to the aminoglycoside hygromycin B.

    Runnebohm AM, Evans MD, Richardson AE, et al.

    Fine focus 2020; (6(1)):76-83 doi:10.33043/FF.6.1.76-83.

    PMID: 33554225
  5. 5

    Severe forms of Johanson-Blizzard syndrome caused by two novel compound heterozygous variants in UBR1: Clinical manifestations, imaging findings and molecular genetics.

    Liu S, Wang Z, Jiang J, et al.

    Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] 2020; (20(3)):562-568 doi:10.1016/j.pan.2020.01.007.

    PMID: 31980351
  6. 6

    Johanson-Blizzard Syndrome: A Case Report From Bahrain With a Literature Review.

    Isa HM, Khudhair ZA, Abdulla KM, et al.

    Cureus 2024; (16(3)):e55969 doi:10.7759/cureus.55969.

    PMID: 38606259
  7. 7

    Oblique facial clefts in Johanson-Blizzard syndrome.

    Corona-Rivera JR, Zapata-Aldana E, Bobadilla-Morales L, et al.

    American journal of medical genetics. Part A 2016; (170(6)):1495-501 doi:10.1002/ajmg.a.37630.

    PMID: 26989884
  8. 8

    Endocrine dysfunction in children with Shwachman-Diamond syndrome.

    Bogusz-Wójcik A, Kołodziejczyk H, Moszczyńska E, et al.

    Endokrynologia Polska 2021; (72(3)):211-216 doi:10.5603/EP.a2021.0014.

    PMID: 33619711
  9. 9

    Biallelic deletion in a minimal CAPN15 intron in siblings with a recognizable syndrome of congenital malformations and developmental delay.

    Mor-Shaked H, Salah S, Yanovsky-Dagan S, et al.

    Clinical genetics 2021; (99(4)):577-582 doi:10.1111/cge.13920.

    PMID: 33410501
  10. 10

    Two de novo UBR1 variants in trans as a cause of Johanson-Blizzard syndrome.

    Strych L, Zavoral T, Komrskova P, et al.

    Biomedical papers of the Medical Faculty of the University Palacky, Olomouc, Czechoslovakia 2025; (169(2)):98-106 doi:10.5507/bp.2025.005.

    PMID: 39925176

This page explains the biology and genetic diagnosis of Johanson-Blizzard syndrome for informational purposes only and does not constitute medical advice. A genetics professional and your child's healthcare team should interpret individual test results and guide care.