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Medical Genetics

The Biology of PWS and Similar Conditions

At a Glance

Prader-Willi syndrome (PWS) is caused by missing or inactive paternal genes on chromosome 15. The three main genetic causes are paternal deletion, maternal uniparental disomy, or imprinting center defects. A DNA methylation test is the gold standard used to confirm a PWS diagnosis.

The underlying biology of Prader-Willi Syndrome (PWS) is rooted in a fascinating but complex genetic process called genomic imprinting. Understanding why PWS occurs requires looking at how our bodies decide which genes to use from our parents.

The Science of Genomic Imprinting

Every child inherits two sets of chromosomes: one from their mother and one from their father. For most genes, both copies are active. However, for a small number of genes, only one copy is “turned on” while the other is “silenced.” This is genomic imprinting [1].

In the specific area of the brain known as the 15q11-q13 region, the body depends entirely on the genes from the father to function correctly because the maternal copies are naturally silenced [2]. In PWS, these paternal genes are either missing or inactive, leading to the symptoms of the disorder [3].

The Three Genetic Causes

There are three main ways the paternal genes can be lost, and knowing which one your child has may help your doctors provide more personalized care:

  1. Paternal Deletion (60–75%): A small piece of the 15th chromosome from the father is physically missing [4]. This is the most common form.
  2. Maternal Uniparental Disomy (mUPD) (20–35%): The child inherits two copies of chromosome 15 from their mother and none from their father [5]. This subtype is often associated with older maternal age.
  3. Imprinting Center Defects (1–4%): The genetic material from the father is present, but the “switch” that should turn the genes on is broken, leaving them silenced [6].

Conditions That May Look Like PWS

Because the symptoms of PWS change as a child grows, doctors must carefully distinguish it from other conditions during different stages of life.

In Infancy (The “Floppy Infant”)

If an infant has severe hypotonia (low muscle tone), doctors may consider several other conditions before confirming PWS through DNA methylation testing [7]:

  • Spinal Muscular Atrophy (SMA): A genetic disorder affecting the motor nerve cells in the spinal cord [8].
  • Myotonic Dystrophy: A form of muscular dystrophy that causes progressive muscle weakness [7].
  • Infant Botulism: A rare but serious illness caused by a toxin that attacks the body’s nerves.

In Childhood (Rapid Weight Gain)

When a child begins to gain weight rapidly, other rare syndromes might be considered:

  • ROHHAD Syndrome: This involves rapid-onset obesity usually after age 2, but unlike PWS, it is often accompanied by breathing issues and does not start with infant feeding problems [9].
  • Bardet-Biedl Syndrome (BBS): Characterized by early obesity, but often includes extra fingers or toes and vision problems [10].
  • Alström Syndrome: Includes early obesity along with progressive loss of vision and hearing [11].

Confirmation of PWS is typically done using DNA methylation analysis, which is the most reliable “gold standard” test for identifying the disorder across all genetic subtypes [4].

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Common questions in this guide

What are the main genetic causes of Prader-Willi syndrome?
PWS is caused by missing or inactive paternal genes on chromosome 15. This happens in three main ways: a paternal deletion, maternal uniparental disomy (mUPD), or an imprinting center defect.
Why does my child's specific PWS genetic subtype matter?
Knowing whether your child has a deletion, mUPD, or imprinting defect helps doctors provide more personalized care. The specific genetic subtype can influence the child's risk for certain behavioral or psychiatric symptoms later in life.
What is the best test to diagnose PWS?
DNA methylation analysis is considered the gold standard test for diagnosing Prader-Willi syndrome. This test is highly reliable for identifying the disorder across all its different genetic subtypes.
What other conditions look like PWS in infants?
Because infants with PWS often have severe low muscle tone (hypotonia), doctors may initially consider several other conditions. These can include Spinal Muscular Atrophy (SMA), myotonic dystrophy, or infant botulism before a DNA test confirms PWS.
Can PWS be confused with other disorders during childhood?
Yes, when a child begins to gain weight rapidly, doctors might consider other rare genetic syndromes. These can include ROHHAD syndrome, Bardet-Biedl syndrome, or Alström syndrome, which all involve early-onset obesity.

Questions to Ask Your Doctor

Curated prompts to bring to your next appointment.

  1. 1.Which specific genetic subtype—paternal deletion, maternal uniparental disomy (mUPD), or imprinting defect—does my child have?
  2. 2.How does my child's specific genetic subtype influence their risk for certain behavioral or psychiatric symptoms later in life?
  3. 3.Does our family need further genetic testing or counseling to understand the recurrence risk for future pregnancies?
  4. 4.Were any other conditions, like Spinal Muscular Atrophy or Bardet-Biedl Syndrome, ruled out during the diagnostic process?

Questions For You

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References

References (11)
  1. 1

    Expanding deep phenotypic spectrum associated with atypical pathogenic structural variations overlapping 15q11-q13 imprinting region.

    Mim RA, Soorajkumar A, Kosaji N, et al.

    Brain and behavior 2024; (14(4)):e3437 doi:10.1002/brb3.3437.

    PMID: 38616334
  2. 2

    IPSC Models of Chromosome 15Q Imprinting Disorders: From Disease Modeling to Therapeutic Strategies.

    Germain ND, Levine ES, Chamberlain SJ

    Advances in neurobiology 2020; (25()):55-77 doi:10.1007/978-3-030-45493-7_3.

    PMID: 32578144
  3. 3

    [Sleep disorders in imprinting disorders].

    Ivannikova EM, Degtyarevskaya TY, Tarasova NN, et al.

    Zhurnal nevrologii i psikhiatrii imeni S.S. Korsakova 2025; (125(5. Vyp. 2)):75-80 doi:10.17116/jnevro202512505275.

    PMID: 40371861
  4. 4

    Prader-Willi syndrome: a review of clinical, genetic, and endocrine findings.

    Angulo MA, Butler MG, Cataletto ME

    Journal of endocrinological investigation 2015; (38(12)):1249-63 doi:10.1007/s40618-015-0312-9.

    PMID: 26062517
  5. 5

    Comparison of perinatal factors in deletion versus uniparental disomy in Prader-Willi syndrome.

    Gold JA, Mahmoud R, Cassidy SB, Kimonis V

    American journal of medical genetics. Part A 2018; (176(5)):1161-1165 doi:10.1002/ajmg.a.38679.

    PMID: 29681103
  6. 6

    Clinical Trials in Prader-Willi Syndrome: A Review.

    Mahmoud R, Kimonis V, Butler MG

    International journal of molecular sciences 2023; (24(3)) doi:10.3390/ijms24032150.

    PMID: 36768472
  7. 7

    Multicenter Consensus Approach to Evaluation of Neonatal Hypotonia in the Genomic Era: A Review.

    Morton SU, Christodoulou J, Costain G, et al.

    JAMA neurology 2022; (79(4)):405-413 doi:10.1001/jamaneurol.2022.0067.

    PMID: 35254387
  8. 8

    An Unusual Diagnostic Journey Through MLPA: From Spinal Muscular Atrophy to a Severe Case of Prader-Willi Syndrome.

    Göktaş E, Okur Altındaş B, Tarım H, et al.

    Journal of clinical practice and research 2023; (45(5)):528-533 doi:10.14744/cpr.2023.92486.

    PMID: 41257052
  9. 9

    Congenital Central Hypoventilation Syndrome and Disorders of Control of Ventilation.

    Kasi AS, Perez IA

    Clinics in chest medicine 2024; (45(3)):663-673 doi:10.1016/j.ccm.2024.02.018.

    PMID: 39069329
  10. 10

    Next-Generation Sequencing in the Diagnosis of Patients with Bardet-Biedl Syndrome-New Variants and Relationship with Hyperglycemia and Insulin Resistance.

    Jeziorny K, Antosik K, Jakiel P, et al.

    Genes 2020; (11(11)) doi:10.3390/genes11111283.

    PMID: 33138063
  11. 11

    Bardet-Biedl syndrome: A clinical overview focusing on diagnosis, outcomes and best-practice management.

    Shoemaker A

    Diabetes, obesity & metabolism 2024; (26 Suppl 2()):25-33 doi:10.1111/dom.15494.

    PMID: 38383825

This page provides educational information about the genetics and biology of Prader-Willi syndrome. Always consult a clinical geneticist or pediatrician for diagnosis and interpretation of your child's genetic testing results.

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